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  • 🐿️NeuroInformatics Database
    • HIPAA Compliance
  • Getting Started
    • Installation
      • Quick Install
      • How to change passwords
      • Optional software
      • MySQL/MariaDB tweaks
    • Upgrade
      • Quick Upgrade
      • Migrate Existing Installation
  • Using NiDB
    • User's Guide
      • Importing data
      • Managing data
      • Finding & exporting data
      • Managing projects
      • Pipelines & analysis
      • Calendar
    • Administration
      • Front end (user facing)
      • Back end
      • nidb command line
  • Specifications
    • Data Storage Hierarchy
    • DICOM Anonymization
  • Tutorials
    • Working with Imaging Data
      • Uploading data for a sample project
      • Troubleshooting Missing Imaging Data
      • Import DICOM data
      • MR scan quality control
    • Manipulating Subjects, Studies, & Series
      • Working with subject IDs
      • Renaming series
    • Pipelines
    • Working with Redcap
      • Importing Data from a Redcap Project
      • Importing Subjects from Redcap
      • Reports based on data imported from Redcap
    • Analysis Builder
    • Administration of Users, Projects, & System
      • User Permissions
      • Creating new projects
      • Adding Users to Projects
      • Editing the config file
      • Deleting all the data
  • Contribute
    • Squirrel data sharing format
      • squirrel utilities
      • Using the squirrel library
      • Example package
      • squirrel vs BIDS
      • Specification v1.0
        • Package root
        • package
        • data
          • subjects
            • studies
              • series
                • params
              • analysis
            • observations
            • interventions
          • group-analysis
        • pipelines
          • data-steps
          • Pipeline scripts
        • experiments
        • data-dictionary
        • Modalities
      • Building squirrel library and utils
        • Building Python Wrapper
    • Building NiDB
    • Creating a Development VM
  • Help!
    • Github Issues
    • Github Discussions
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  1. Using NiDB
  2. User's Guide

Pipelines & analysis

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Last updated 2 years ago

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