dicom2squirrel

Convert DICOM file(s) to squirrel format

Overview

The tool converts DICOM file(s) into a squirrel package.

Example Usage

Convert a directory containing DICOM files into a squirrel package. DICOM will be converted to nifit 4D gz, and the squirrel directory structure will use the original series numbers.

squirrel dicom2squirrel <indir> <package> --dataformat nifti4d --dirformat orig

Options

--dataformat

--dataformat <format> sets the DICOM conversation format. It can be one of the following

• nift4d

• nift4dgz

• nifti3d

• nifti3dgz

--dirformat

--dirformat <format> can be one of the following

• orig

• seq