package

This object contains information about the squirrel package.

JSON variables

Variable options

subjectDirFormat, studyDirFormat, seriesDirFormat

• orig - Original subject, study, series directory structure format. Example S1234ABC/1/1

• seq - Sequential. Zero-padded sequential numbers. Example 00001/0001/00001

dataFormat

• orig - Original, raw data format. If the original format was DICOM, the output format should be DICOM. See DICOM anonymization levels for details.

• anon - If original format is DICOM, write anonymized DICOM, removing most PHI, except dates. See DICOM anonymization levels for details.

• anonfull - If original format is DICOM, the files will be fully anonymized, by removing dates, times, locations in addition to PHI. See DICOM anonymization levels for details.

• nifti3d - Nifti 3D format

  • Example file001.nii, file002.nii, file003.nii

• nifti3dgz - gzipped Nifti 3D format

  • Example file001.nii.gz, file002.nii.gz, file003.nii.gz

• nifti4d - Nifti 4D format

  • Example file.nii

• nifti4dgz - gzipped Nifti 4D format

  • Example file.nii.gz

Notes

Notes about the package are stored here. This includes import and export logs, and notes from imported files. This is generally a freeform object, but notes can be divided into sections.

Directory structure

Files associated with this section are stored in the following directory

/